SiReNe Simulation Software: Simul Struct Reference

Description of an entire simulation. More...

#include <Sirene.h>

Collaboration diagram for Simul:

[legend]

Data Fields
ushort	VerboseMask
	Mask flag indicating the information to display. More...

NeuralModel *	NeuralModels
	List of neural models in the simulation. More...

SynapseModel **	SynapseModels
	2D (Src -> Dst) array of synaptic models between the neural models More...

int	NumberNeuralModels
	Number of neural models. More...

int	NumberSynapseModels
	Number of synapse models. More...

int	TotalNumberOfNeurons
	Total number of neurons. More...

int	NumberOfVariables
	Number of variables. More...

double	sLFP
	Sum for each neuron of the LFP. More...

InterpolatorType	InterpolationType
	Interpolation type. More...

double	Start
	Simulation start. More...

double	TimeStep
	Time step. More...

double	TotalTimeSim
	Simulation execution time. More...

double	t [NBMEMSTEP]
	Simulated Time. More...

double *	Variables [NBMEMSTEP]
	Variables array (in 2D) containing NBMEMSTEP consecutive time-steps. More...

double *	DVar [NBMEMSTEP]
	Variables derivatives array (in 2D) containing NBMEMSTEP consecutive time-steps. More...

int	CrtNum
	Index of current time. More...

int	PrvNum
	Index of previous time. More...

char	VariablesFileName [256]
	Variables file name. More...

char	PotentialsFileName [256]
	Potentials file name. More...

char	InputCurrentsFileName [256]
	Input Current file name. More...

char	SynapticCurrentsFileName [256]
	Synaptic currents file name. More...

char	SpikesFileName [256]
	Spike times file name. More...

char	NbSpikesFileName [256]
	Number of spikes for each neuron file name. More...

char	LFPFileName [256]
	LFP file name. More...

ushort	SaveMask
	Mask flag indicating the variables to save. More...

int	ResultsInterval
	Number of iterations between results display and/or saving. More...

void(*	RandGenerConnect )(Simul *Simulation, int ModelNum, int NeuronNum, double SpikeTime)
	Pseudo-random connectivity generator function. More...

void(*	NumericalMethod )(Simul Simulation, void(Update)(Simul Simulation, double tPrev, double t, double Var, double Der), double TmpVar, double *TmpDer)
	Numerical method function. More...

FILE *	SpikesFile
	Spikes file. More...

SpikeEvent *	BufferSpikes
	Spikes buffer. More...

int	NbSpInBuf
	Nb of spikes stored in the buffer. More...

int	NbThreads
	Number of threads. More...

double	ChronoStart
	Start timer. More...

double	Chrono_UpdateModels [MAXTHREADS]
	UpdateModels timer. More...

double	Chrono_UpdateNeuron [MAXTHREADS]
	UpdateNeuron timer. More...

double	Chrono_NumericalMethod [MAXTHREADS]
	NumericalMethod timer. More...

double	Chrono_SpikeProcessing [MAXTHREADS]
	SpikeProcessing timer. More...

double	Chrono_Iter [MAXTHREADS]
	Iter timer. More...

double	Chrono_Advance [MAXTHREADS]
	Advance timer. More...

double	Chrono_Init [MAXTHREADS]
	Init timer. More...

double	Chrono_Detection [MAXTHREADS]
	Detection timer. More...

double	Chrono_RandGenConn [MAXTHREADS]
	RandomConnections timer. More...

double	Time_UpdateModels [MAXTHREADS]
	Elapsed time in UpdateModels. More...

double	Time_UpdateNeuron [MAXTHREADS]
	Elapsed time in UpdateNeuron. More...

double	Time_NumericalMethod [MAXTHREADS]
	Elapsed time in NumericalMethod. More...

double	Time_SpikeProcessing [MAXTHREADS]
	Elapsed time in SpikeProcessing. More...

double	Time_Iter [MAXTHREADS]
	Elapsed time in Iter. More...

double	Time_Advance [MAXTHREADS]
	Elapsed time in Advance. More...

double	Time_Init [MAXTHREADS]
	Elapsed time in Init. More...

double	Time_Detection [MAXTHREADS]
	Elapsed time in Detection. More...

double	Time_RandGenConn [MAXTHREADS]
	Elapsed time in RandomConnections. More...

Detailed Description

Declaration of the simulation data structure.

Field Documentation

◆ BufferSpikes

SpikeEvent* Simul::BufferSpikes

Referenced by Advance(), InitSimu(), MemoryRelease(), PrepareSimu(), and SpikeProcessing().

◆ Chrono_Advance

double Simul::Chrono_Advance[MAXTHREADS]

Referenced by Advance().

◆ Chrono_Detection

double Simul::Chrono_Detection[MAXTHREADS]

Referenced by SpikeDetection().

◆ Chrono_Init

double Simul::Chrono_Init[MAXTHREADS]

Referenced by PrepareSimu().

◆ Chrono_Iter

double Simul::Chrono_Iter[MAXTHREADS]

Referenced by Iter().

◆ Chrono_NumericalMethod

double Simul::Chrono_NumericalMethod[MAXTHREADS]

Referenced by Euler(), and RungeKutta2().

◆ Chrono_RandGenConn

double Simul::Chrono_RandGenConn[MAXTHREADS]

Referenced by RandomConnections().

◆ Chrono_SpikeProcessing

double Simul::Chrono_SpikeProcessing[MAXTHREADS]

Referenced by SpikeProcessing().

◆ Chrono_UpdateModels

double Simul::Chrono_UpdateModels[MAXTHREADS]

Referenced by UpdateModels().

◆ Chrono_UpdateNeuron

double Simul::Chrono_UpdateNeuron[MAXTHREADS]

Referenced by UpdateNeuron().

◆ ChronoStart

double Simul::ChronoStart

Referenced by PrepareSimu().

◆ CrtNum

int Simul::CrtNum

Referenced by Advance(), Euler(), InitSimu(), Iter(), PrepareSimu(), SpikeDetection(), SynapticSpike(), and UpdateNeuron().

◆ DVar

double* Simul::DVar[NBMEMSTEP]

Referenced by Euler(), InitSimu(), MemoryRelease(), PrepareSimu(), and SpikeDetection().

◆ InputCurrentsFileName

char Simul::InputCurrentsFileName[256]

Referenced by Advance(), and main().

◆ InterpolationType

InterpolatorType Simul::InterpolationType

Referenced by InitSimu(), main(), and SpikeDetection().

◆ LFPFileName

char Simul::LFPFileName[256]

Referenced by Advance(), and main().

◆ NbSpikesFileName

char Simul::NbSpikesFileName[256]

Referenced by Advance(), and main().

◆ NbSpInBuf

int Simul::NbSpInBuf

Referenced by Advance(), InitSimu(), PrepareSimu(), and SpikeProcessing().

◆ NbThreads

int Simul::NbThreads

Referenced by InitSimu(), main(), PrepareSimu(), PrintTimes(), and SynapticCurrent().

◆ NeuralModels

NeuralModel* Simul::NeuralModels

Referenced by Advance(), ConstantInputCurrent(), InitSimu(), InputCurrentWithNoise(), main(), MemoryRelease(), MSN(), NeuralModelPrint(), NeuronPrint(), PrepareSimu(), RandomConnections(), SpikeDetection(), SpikeProcessing(), StepwiseInputCurrent(), StepwiseInputCurrentWithNoise(), SynapticCurrent(), SynapticSpike(), UpdateModels(), and UpdateNeuron().

◆ NumberNeuralModels

int Simul::NumberNeuralModels

Referenced by Advance(), InitSimu(), main(), MemoryRelease(), PrepareSimu(), RandomConnections(), SpikeDetection(), UpdateModels(), and UpdateNeuron().

◆ NumberOfVariables

int Simul::NumberOfVariables

Referenced by Advance(), Euler(), InitSimu(), PrepareSimu(), and RungeKutta2().

◆ NumberSynapseModels

int Simul::NumberSynapseModels

Referenced by InitSimu(), and main().

◆ NumericalMethod

void(* Simul::NumericalMethod) (Simul *Simulation, void(*Update)(Simul *Simulation, double tPrev, double t, double *Var, double *Der), double *TmpVar, double *TmpDer)

Referenced by InitSimu(), Iter(), and main().